Log likelihood from an msmbayes model

Log likelihood from an msmbayes model

Usage

loglik(draws)

# S3 method for class 'msmbayes'
logLik(object, ...)

Arguments

draws

Object returned by msmbayes.

object

Object returned by msmbayes.

...

Further arguments passed to both qdf, hr, loghr and edf.

Value

For loglik, a data frame with rows for the log likelihood, log prior density and log posterior density, and columns for the posterior (as an rvar object) and the mode (only if optimisation was used to fit the model, rather than MCMC).

If msmbayes was called with priors="mle", the maximised log posterior and log likelihood should be the same.

For logLik (note the different capitalisation), just the likelihood (mode if available, or posterior if not) is returned. This is a method for the generic logLik function in the stats package.